BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017G01SP1|AL427199
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig622 1074 0.0
>3x_Contig622
Length = 1958
Score = 1074 bits (535), Expect = 0.0
Identities = 594/615 (96%), Gaps = 6/615 (0%)
Strand = Plus / Plus
Query: 268 gttcaaawagtctcctaaggttagawatcacagawtcactttgactcagcgtagattctc 327
||||||| ||||||||| ||||||| |||||||| |||||||||||| || ||| |||||
Sbjct: 913 gttcaaatagtctccta-ggttagatatcacagattcactttgactc-gc-tag-ttctc 968
Query: 328 ttgttggtgawaagaccaatgcttgwaactctttgctcttagaatcaattgcttgtaata 387
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 969 ttgttggtgataagaccaatgcttgtaactctttgctcttagaatcaattgcttgtaata 1028
Query: 388 atccaatggtaaatgtggccgtcttaccggwaccaractgtgcctgggcaatcacatctt 447
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1029 atccaatggtaaatgtggccgtcttaccggtaccagactgtgcctgggcaatcacatctt 1088
Query: 448 ttcctgagataatctgaraaayggctcwagactgaatggatgawggacattcaaagccgt 507
||||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 1089 ttcctgagataatctgagaaatggctctagactgaatggatgatggatattcaaagccgt 1148
Query: 508 aaaaawatatgcctcgtaacaaatccggtttcaagttcatcgactcaaaagtggcagata 567
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 aaaaatatatgcctcgtaacaaatccggtttcaagttcatcgactcaaaagtggcagata 1208
Query: 568 ccttgagcttctttgaagtcttaaacttcaacttcgagtcactcatctctgttgaacgac 627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1209 ccttgagcttctttgaagtcttaaacttcaacttcgagtca-tcatctctgttgaacgac 1267
Query: 628 attgtygatgtgatgattccctttcttaacaacagtaactcccggttacacttcacttgg 687
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 attgttgatgtgatgattccctttcttaacaacagtaactcccggttacacttcacttgg 1327
Query: 688 acctaccgttgcagcctctatttcaatgcatctcatcgcatctcatcttatcgttgtgct 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 acctaccgttgcagcctctatttcaatgcatctcatcgcatctcatcttatcgttgtgct 1387
Query: 748 tgccaaattttccattttttaaaggttttaagctgagaaccgaaagttcaacaacacttt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 tgccaaattttccattttttaaaggttttaagctgagaaccgaaagttcaacaacacttt 1447
Query: 808 aaggtgtcaaattacaagtgtatgtaaataactgcmgaacaactcggtcgagtggctcga 867
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 1448 aaggtgtcaaattacaagtgtatgtaaataactgcagaacaact-ggtcgagtggctcga 1506
Query: 868 tctagtgattattta 882
|||||||||||||||
Sbjct: 1507 tctagtgattattta 1521
Score = 237 bits (118), Expect = 3e-62
Identities = 158/168 (94%), Gaps = 6/168 (3%)
Strand = Plus / Plus
Query: 1 aatcgtcggtggtaactwggtgaaaatgtcgtagatttgttgatttaaaccccaaagttt 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 673 aatcgtcggtggtaacttggtgaaaatgtcgtagatttgttg-tttaaaccccaaagttt 731
Query: 61 ctccgagctagttcatctgctatactatcgagaactaagatcttacagtttctaacgttc 120
||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 732 ctccgag-tagttcatctgcttca---tcgagaactaagatcttacagtttctaacgttc 787
Query: 121 aatacttgtctcttgatcatatctagtamacggcgccggtgtaccact 168
|||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 788 aatacttgtctcttgatcatatctagtacacggc-ccggtgtaccact 834
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5199
Number of Sequences: 1807
Number of extensions: 5199
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.9 bits)